PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BL_056959446.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 249aa    MW: 27774 Da    PI: 8.3552
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BL_056959446.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.61.9e-121801696
                           EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                     B3 16 lvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                           +++p +f+++h    ++ ++s++  +  ++g+ W v+l  +++++ ++ ++ W eF  a++L eg +++F+++ +++f   v+v
  Traes_7BL_056959446.1  1 MTIPDEFVQQHligAESCPSSQKALIIGPTGKLWPVEL--DQRQSDVLYGEVWVEFLTAHDLSEGNILLFRYEVNMSF--SVQV 80
                           78**********9966777999****************..999999**************************998999..5544 PP

2B346.56.5e-15157240186
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                            f ++ ++s++lks  + +  +f++++g+ +++  t++l+++     rsW v +++ ++  + + +kGWk+F+++n+++egD ++Fk++
  Traes_7BL_056959446.1 157 F-TKQITSYSLKSF-FAVKLTFCSSIGLLEAC--TIQLKTSMEgsaRSWPVAFNIANTY-GLLTGKGWKRFCRDNEVEEGDRCTFKVV 239
                            4.445599***998.999**********9988..566666444468*******654444.58899*********************76 PP

                            S CS
                     B3  86 g 86 
                            +
  Traes_7BL_056959446.1 240 E 240
                            5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100174.82E-10181No hitNo description
SuperFamilySSF1019361.39E-12191IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.379184IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.1E-13186IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-8179IPR003340B3 DNA binding domain
SMARTSM010190.0038184IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.2E-18154248IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-16154248IPR015300DNA-binding pseudobarrel domain
CDDcd100178.05E-9155237No hitNo description
PROSITE profilePS5086310.912155249IPR003340B3 DNA binding domain
SMARTSM010192.9E-7157249IPR003340B3 DNA binding domain
PfamPF023621.8E-11158240IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MTIPDEFVQQ HLIGAESCPS SQKALIIGPT GKLWPVELDQ RQSDVLYGEV WVEFLTAHDL  60
SEGNILLFRY EVNMSFSVQV LMPNGCMKEY PYLADEADGP STMLPQSDKQ LVAATVSKRS  120
YNKRQVVSAI PATFPAMKAK KVQSQSKPAG VVGRHSFTKQ ITSYSLKSFF AVKLTFCSSI  180
GLLEACTIQL KTSMEGSARS WPVAFNIANT YGLLTGKGWK RFCRDNEVEE GDRCTFKVVE  240
KMVWHVVIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229793.14e-95PREDICTED: putative B3 domain-containing protein Os06g0632500
TrEMBLW5HK400.0W5HK40_WHEAT; Uncharacterized protein
STRINGMLOC_62500.21e-176(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.15e-12B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]